(#equal contribution, *corresponding) Heiles B#, Blanken N#, Kuliesh A#, Michel Versuis, Jain K*, Lajoinie G*, Maresca D*. PROTEUS: A Physically Realistic Contrast-Enhanced Ultrasound Simulator—Part II: Imaging Applications. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (2025). doi: 10.1109/TUFFC.2025.3566437 Heiles B, Nelissen F, Terwiel D, Park BM, Munoz Ibarra E, Matalliotakis A, Waasdorp R, Ara T, Barturen-Larrea P, Duan M, Shapiro MG, Gazzola V, Maresca D*. Nonlinear sound-sheet microscopy: imaging opaque organs at the capillary and cellular scale. Science 388, eads1325 (2025). doi: 10.1126/science.ads1325 Terwiel D, Park BM#, Heiles B#, Waasdorp R, Munoz-Ibarra E, Ara T, Gazzola V, Maresca D*. Acoustic pH sensor for dynamic ultrasound imaging of cellular acidification. bioRxiv (2025). doi: https://doi.org/10.1101/2025.01.24.634762

(#equal contribution, *corresponding) Heiles B, Nelissen F, Terwiel D, Park BY, Munoz-Ibarra E, Matalliotakis A, Waasdorp R, Ara T, Barturen-Larrea P, Duan M, Shapiro MG, Gazzola V, Maresca D*. Nonlinear sound-sheet microscopy: imaging opaque organs at the capillary and cellular scale. bioRxiv (2024). doi: https://doi.org/10.1101/2024.07.31.605825 Maresca D, Pralle A, Tian B*. Bridging Neuroscience and Engineering with Nano-Neurotechnology. Accounts of Chemical Research (2024). Waasdorp R, Maresca D, Renaud G*. Assessing Transducer Parameters for Accurate Medium Sound Speed Estimation and Image Reconstruction. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (2024). Blanken N#, Heiles B#, Kuliesh A#, Versuis M, Jain K*, Maresca D*, Lajoinie G*. PROTEUS: A Physically Realistic Contrast-Enhanced Ultrasound Simulator - Part I: Numerical Methods. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (2024). Matalliotakis A, Waasdorp R, Verweij MD, Maresca D*. Impact of wavefront shape on nonlinear ultrasound imaging of monodisperse microbubbles. arXiv (2024). doi: https://doi.org/10.48550/arXiv.2403.01452

(#equal contribution, *corresponding) Matalliotakis A*, Maresca D, Verweij MD. Nonlinear interaction of two cross-propagating plane waves. arXiv (2023). Huber ST, Terwiel D, Evers WH, Maresca D*, Jakobi AJ*. Cryo-EM structure of gas vesicles for buoyancy-controlled motility. Cell (2023). Wu D, Baresch D, Cook C, Ma Z, Duan M, Malounda D, Maresca D, Abundo MP, Lee J, Shivaei S, Mittelstein DR, Qiu T, Fischer P, Shapiro MG*. Biomolecular actuators for genetically selective acoustic manipulation of cells. Science Advances (2023).

(#equal contribution, *corresponding) Wiersma M, Heiles B, Kalisvaart D, Maresca D*, Smith CS*. Retrieving pulsatility in ultrasound localization microscopy. OJUFFC (2022). Heiles B, Chavignon A, Bergel A, Hingot V, Serroune H, Maresca D, Pezet S, Pernot M, Tanter M, Couture O. Volumetric ultrasound localization microscopy of the whole brain microvasculature. OJUFFC (2022). Huber ST, Terwiel D, Evers WH, Maresca D*, Jakobi AJ*. Cryo-EM structure of gas vesicles for buoyancy-controlled motility. bioRxiv (2022). bioRxiv preprint

(#equal contribution, *corresponding) Bar-Zion A*, Solomon O, Rabut C, Maresca D, Eldar YC & Shapiro MG. Doppler slicing for ultrasound super-resolution without contrast agents. bioRxiv (2021). bioRxiv preprint Heiles B*, Chavignon A, Bergel A, Hingot V, Serroune H, Maresca D, Pezet S, Pernot M, Tanter M, Couture O. Volumetric ultrasound localization microscopy of the whole brain microvasculature. bioRxiv (2021). bioRxiv preprint Bar-Zion A, Nourmahnad A, Mittelstein DR, Shivaei S, Yoo S, Buss MT, Hurt RC, Malounda D, Abedi MH, Lee-Gosselin A, Swift BS, Maresca D & Shapiro MG*. Acoustically triggered mechanotherapy using genetically encoded gas vesicles. Nature Nanotechnology (2021). article Norman SL#, Maresca D#, Christopoulos VN#, Griggs WS, Demene C, Tanter M, Shapiro MG*, and Andersen RA*. Single-trial decoding of movement intentions using functional ultrasound neuroimaging. Neuron (2021). article | news ​ Heiles B, Terwiel D, Maresca D*. The Advent of Biomolecular Ultrasound Imaging. Neuroscience (2021). article

(#equal contribution, *corresponding) Ling B, Lee J, Maresca D, Lee-Gosselin A, Malounda D, Swift MB, Shapiro MG*. Biomolecular Ultrasound Imaging of Phagolysosomal Function. ACS nano (2020). article ​ Lakshmanan A#, Jin Z#, Nety SP, Sawyer DP, Lee-Gosselin A, Malounda D, Swift MB, Maresca D, Shapiro MG*. Acoustic biosensors for ultrasound imaging of enzyme activity. Nature chemical biology 13, 1-9 (2020). article | news ​ Norman SL#, Maresca D#, Christopoulos VN#, Griggs WS, Demene C, Tanter M, Shapiro MG*, Andersen RA*. Single Trial Decoding of Movement Intentions Using Functional Ultrasound Neuroimaging. bioRxiv (2020). bioRxiv preprint ​ Correia M, Maresca D, Goudot G, Villemain O, Bize A, Sambin L, Tanter M, Ghaleh B, Pernot M*. Quantitative imaging of coronary flows using 3D ultrafast doppler coronary angiography. Physics in Medicine & Biology (2020). article | news ​ Maresca D, Payen T, Lee-Gosselin A, Ling B, Malounda D, Demene C, Tanter M, Shapiro MG*. Acoustic biomolecules enhance hemodynamic functional ultrasound imaging of neural activity. NeuroImage 209, 116467 (2020). article

(#equal contribution, *corresponding) Wu D, Baresch D, Cook C, Malounda D, Maresca D, Abundo MP, Mittelstein DR, Shapiro MG*. Genetically encoded nanostructures enable acoustic manipulation of engineered cells. bioRxiv (2019). ​ Bar-Zion A, Nourmahnad A, Mittelstein D, Yoo S, Malounda D, Abedi M, Lee-Gosselin A, Maresca D, Shapiro MG*. Acoustically Detonated Biomolecules for Genetically Encodable Inertial Cavitation. bioRxiv (2019).

(#equal contribution, *corresponding) Maresca D#*, Sawyer DP#, Renaud G, Lee-Gosselin A, Shapiro MG*. Nonlinear X-wave ultrasound imaging of acoustic biomolecules. Physical Review X 8, 041002 (2018). Demene C#*, Maresca D#, Kohlhauer M, Lidouren M, Micheau P, Ghaleh B, Pernot M, Tissier R, Tanter M. Multi-parametric functional ultrasound imaging of cerebral hemodynamics in a cardiopulmonary resuscitation model. Scientific Reports 8, 16436 (2018). Maresca D, Correia M, Tanter M, Ghaleh B, Pernot M*. Adaptive spatio-temporal filtering for Coronary Ultrafast Doppler Angiography. IEEE transactions on ultrasonics, ferroelectrics, and frequency control 65, 2201-4 (2018). Maresca D#*, Correia M#, Villemain O, Bizé A, Sambin L, Tanter M, Ghaleh B, Pernot M*. Noninvasive imaging of the coronary vasculature using ultrafast ultrasound. JACC: Cardiovascular Imaging 11, 798-808 (2018). Maresca D#, Lakshmanan A#, Abedi M, Bar-Zion A, Farhadi A, Lu GJ, Szablowski JO, Wu D, Yoo S, Shapiro MG*. Biomolecular Ultrasound and Sonogenetics. Annual Review of Chemical and Biomolecular Engineering 9, 229-252 (2018).

(#equal contribution, *corresponding) Lakshmanan A#, Lu GJ#, Farhadi A#, Nety SP#, Kunth M, Lee-Gosselin A, Maresca D, Bourdeau RW, Yin M, Yan J, Witte C et al. Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI. Nature Protocols 12, 2050 (2017). Piraner DI, Farhadi A, Davis HC, Wu D, Maresca D, Szablowski JO, Shapiro MG*. Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function. Biochemistry 56, 5202-9 (2017). Maresca D, Lakshmanan A, Lee-Gosselin A, Melis JM, Ni YL, Bourdeau RW, Kochmann DM, Shapiro MG*. Nonlinear ultrasound imaging of nanoscale acoustic biomolecules. Applied Physics Letters 110, 073704 (2017).

(#equal contribution, *corresponding) Lakshmanan A, Farhadi A, Nety SP, Lee-Gosselin A, Bourdeau RW, Maresca D, Shapiro MG*. Molecular engineering of acoustic protein nanostructures. ACS Nano 10, 7314-22 (2016). Tiran E, Deffieux T, Correia M, Maresca D, Osmanski BF, Sieu LA, Bergel A, Cohen I, Pernot M, Tanter M*. Multiplane wave imaging increases signal-to-noise ratio in ultrafast ultrasound imaging. Physics in Medicine & Biology 60, 8549 (2015). Kohlhauer M, Lidouren F, Remy-Jouet I, Mongardon N, Adam C, Bruneval P, Hocini H, Levy Y, Blengio F, Carli P, Vivien B et al. Hypothermic total liquid ventilation is highly protective through cerebral hemodynamic preservation and sepsis-like mitigation after asphyxial cardiac arrest. Critical Care Medicine 43, 420-30 (2015). Osmanski BF, Maresca D, Messas E, Tanter M#, Pernot M#*. Transthoracic ultrafast Doppler imaging of human left ventricular hemodynamic function. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 61, 1268-75 (2014). Maresca D*, Skachkov I, Renaud G, Jansen K, van Soest G, de Jong N, van der Steen AF. Imaging the microvasculature with contrast-enhanced ultraharmonic ultrasound. Ultrasound in Medicine and Biology 40, 1318-28 (2014). Maresca D*, Adams S, Maresca B, van der Steen AF. Mapping intravascular ultrasound controversies in interventional cardiology practice. PloS One 9, e97215 (2014). Maresca D*, Renaud G, van Soest G, Li X, Zhou Q, Shung KK, de Jong N, van der Steen AF. Contrast-enhanced intravascular ultrasound pulse sequences for bandwidth-limited transducers. Ultrasound in Medicine and Biology 39, 706-13 (2013). Maresca D*, Jansen K, Renaud G, van Soest G, Li X, Zhou Q, de Jong N, Shung KK, Van der Steen AF. Intravascular ultrasound chirp imaging. Applied Physics Letters 100, 043703 (2012). Maresca D*, Emmer M, van Neer PL, Vos HJ, Versluis M, Muller M, de Jong N, van der Steen AF. Acoustic sizing of an ultrasound contrast agent. Ultrasound in Medicine and Biology 36, 1713-21 (2010).